Royal College of Surgeons in Ireland
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A structured approach to the study of metabolic control principles in intact and impaired mitochondria.

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journal contribution
posted on 2022-01-04, 10:22 authored by Heinrich J. Huber, Niamh ConnollyNiamh Connolly, Heiko DuessmannHeiko Duessmann, Jochen PrehnJochen Prehn

We devised an approach to extract control principles of cellular bioenergetics for intact and impaired mitochondria from ODE-based models and applied it to a recently established bioenergetic model of cancer cells. The approach used two methods for varying ODE model parameters to determine those model components that, either alone or in combination with other components, most decisively regulated bioenergetic state variables. We found that, while polarisation of the mitochondrial membrane potential (ΔΨ(m)) and, therefore, the protomotive force were critically determined by respiratory complex I activity in healthy mitochondria, complex III activity was dominant for ΔΨ(m) during conditions of cytochrome-c deficiency. As a further important result, cellular bioenergetics in healthy, ATP-producing mitochondria was regulated by three parameter clusters that describe (1) mitochondrial respiration, (2) ATP production and consumption and (3) coupling of ATP-production and respiration. These parameter clusters resembled metabolic blocks and their intermediaries from top-down control analyses. However, parameter clusters changed significantly when cells changed from low to high ATP levels or when mitochondria were considered to be impaired by loss of cytochrome-c. This change suggests that the assumption of static metabolic blocks by conventional top-down control analyses is not valid under these conditions. Our approach is complementary to both ODE and top-down control analysis approaches and allows a better insight into cellular bioenergetics and its pathological alterations.


Science Foundation Ireland (grant 08/IN.1/B1949 to JHMP and HJH), the EU Marie Curie IAPP project Oxysense-230641, and the Irish Health Research Board grant (APOCOLON; TRA/2007/26). NMMC is a recipient of a HRB PhD Scholarship (PHD/2007/11).



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Huber HJ, Connolly NMC, Dussmann H, Prehn JHM. A structured approach to the study of metabolic control principles in intact and impaired mitochondria. Molecular Biosystems. 2012;8:828-842.

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  • Centre for Human Proteomics
  • Physiology and Medical Physics